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genome sequence wgs data sets  (Biotechnology Information)

 
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    Biotechnology Information genome sequence wgs data sets
    Clustering of the A. paragallinarum samples based on cgMLST. ( A ) Minimum spanning tree based on the allelic profiles of 1,170 core gene targets from <t>57</t> <t>whole-genome</t> samples using the SeqSphere+ software. ( B ) cgMLST dendrogram displaying 57 whole genome-sequenced A. paragallinarum samples. The distance matrix was built from all pairwise allelic profile comparisons of 1,170 cgMLST targets using the missing values as an own category option in SeqSphere+ software . Samples are color-coded by geographic origin, and dendrograms are rooted by the AP08_SA.
    Genome Sequence Wgs Data Sets, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/genome+sequence+wgs+data+sets/data+genome+sequencing+whole/pmc12977546-91-15-25
    Average 86 stars, based on 1 article reviews
    genome sequence wgs data sets - by Bioz Stars, 2026-10
    86/100 stars

    Images

    1) Product Images from "A standardized, genome-guided MLST scheme for Avibacterium paragallinarum : enhanced epidemiological typing and validation against existing methods"

    Article Title: A standardized, genome-guided MLST scheme for Avibacterium paragallinarum : enhanced epidemiological typing and validation against existing methods

    Journal: Journal of Clinical Microbiology

    doi: 10.1128/jcm.01267-25

    Clustering of the A. paragallinarum samples based on cgMLST. ( A ) Minimum spanning tree based on the allelic profiles of 1,170 core gene targets from 57 whole-genome samples using the SeqSphere+ software. ( B ) cgMLST dendrogram displaying 57 whole genome-sequenced A. paragallinarum samples. The distance matrix was built from all pairwise allelic profile comparisons of 1,170 cgMLST targets using the missing values as an own category option in SeqSphere+ software . Samples are color-coded by geographic origin, and dendrograms are rooted by the AP08_SA.
    Figure Legend Snippet: Clustering of the A. paragallinarum samples based on cgMLST. ( A ) Minimum spanning tree based on the allelic profiles of 1,170 core gene targets from 57 whole-genome samples using the SeqSphere+ software. ( B ) cgMLST dendrogram displaying 57 whole genome-sequenced A. paragallinarum samples. The distance matrix was built from all pairwise allelic profile comparisons of 1,170 cgMLST targets using the missing values as an own category option in SeqSphere+ software . Samples are color-coded by geographic origin, and dendrograms are rooted by the AP08_SA.

    Techniques Used: Software

    Minimum spanning tree of whole genome-sequenced samples based on two MLST profiles color-coded based on their geographic origin. ( A ) Minimum spanning tree of the WGS samples created using the seven-locus MLST scheme described by Guo et al. . ( B ) Minimum spanning tree of the WGS samples created using the MLST scheme developed in this study.
    Figure Legend Snippet: Minimum spanning tree of whole genome-sequenced samples based on two MLST profiles color-coded based on their geographic origin. ( A ) Minimum spanning tree of the WGS samples created using the seven-locus MLST scheme described by Guo et al. . ( B ) Minimum spanning tree of the WGS samples created using the MLST scheme developed in this study.

    Techniques Used:

    Related Articles

    Sequencing:

    Article Title: A standardized, genome-guided MLST scheme for Avibacterium paragallinarum : enhanced epidemiological typing and validation against existing methods
    Article Snippet: .. A total of 75 A. paragallinarum samples were used in the study, consisting of 45 whole-genome sequence (WGS) data sets from the National Center for Biotechnology Information (NCBI) database in March 2023 and 30 additional samples, including 25 clinical samples (frozen isolates in glycerol, active culture plates, or PCR-positive samples in BHI broth) and five WGS data sets obtained from state diagnostic laboratories, including Salisbury Animal Health Laboratory (SAHL; Salisbury, Maryland); Iowa State Diagnostic Laboratory (Ames, Iowa), Lasher Laboratory (Georgetown, Delaware), Ohio Animal Diseases Diagnostic Laboratory (ADDL; Reynoldsburg, Ohio), and CEVA Animal Health (Lenexa, Kansas). ..

    Whole Complete genome sequencing:

    Article Title: A standardized, genome-guided MLST scheme for Avibacterium paragallinarum : enhanced epidemiological typing and validation against existing methods
    Article Snippet: .. A total of 75 A. paragallinarum samples were used in the study, consisting of 45 whole-genome sequence (WGS) data sets from the National Center for Biotechnology Information (NCBI) database in March 2023 and 30 additional samples, including 25 clinical samples (frozen isolates in glycerol, active culture plates, or PCR-positive samples in BHI broth) and five WGS data sets obtained from state diagnostic laboratories, including Salisbury Animal Health Laboratory (SAHL; Salisbury, Maryland); Iowa State Diagnostic Laboratory (Ames, Iowa), Lasher Laboratory (Georgetown, Delaware), Ohio Animal Diseases Diagnostic Laboratory (ADDL; Reynoldsburg, Ohio), and CEVA Animal Health (Lenexa, Kansas). ..

    Polymerase Chain Reaction:

    Article Title: A standardized, genome-guided MLST scheme for Avibacterium paragallinarum : enhanced epidemiological typing and validation against existing methods
    Article Snippet: .. A total of 75 A. paragallinarum samples were used in the study, consisting of 45 whole-genome sequence (WGS) data sets from the National Center for Biotechnology Information (NCBI) database in March 2023 and 30 additional samples, including 25 clinical samples (frozen isolates in glycerol, active culture plates, or PCR-positive samples in BHI broth) and five WGS data sets obtained from state diagnostic laboratories, including Salisbury Animal Health Laboratory (SAHL; Salisbury, Maryland); Iowa State Diagnostic Laboratory (Ames, Iowa), Lasher Laboratory (Georgetown, Delaware), Ohio Animal Diseases Diagnostic Laboratory (ADDL; Reynoldsburg, Ohio), and CEVA Animal Health (Lenexa, Kansas). ..

    Diagnostic Assay:

    Article Title: A standardized, genome-guided MLST scheme for Avibacterium paragallinarum : enhanced epidemiological typing and validation against existing methods
    Article Snippet: .. A total of 75 A. paragallinarum samples were used in the study, consisting of 45 whole-genome sequence (WGS) data sets from the National Center for Biotechnology Information (NCBI) database in March 2023 and 30 additional samples, including 25 clinical samples (frozen isolates in glycerol, active culture plates, or PCR-positive samples in BHI broth) and five WGS data sets obtained from state diagnostic laboratories, including Salisbury Animal Health Laboratory (SAHL; Salisbury, Maryland); Iowa State Diagnostic Laboratory (Ames, Iowa), Lasher Laboratory (Georgetown, Delaware), Ohio Animal Diseases Diagnostic Laboratory (ADDL; Reynoldsburg, Ohio), and CEVA Animal Health (Lenexa, Kansas). ..



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    genome sequence wgs data sets  (Biotechnology Information)
    86
    Biotechnology Information genome sequence wgs data sets
    Clustering of the A. paragallinarum samples based on cgMLST. ( A ) Minimum spanning tree based on the allelic profiles of 1,170 core gene targets from <t>57</t> <t>whole-genome</t> samples using the SeqSphere+ software. ( B ) cgMLST dendrogram displaying 57 whole genome-sequenced A. paragallinarum samples. The distance matrix was built from all pairwise allelic profile comparisons of 1,170 cgMLST targets using the missing values as an own category option in SeqSphere+ software . Samples are color-coded by geographic origin, and dendrograms are rooted by the AP08_SA.
    Genome Sequence Wgs Data Sets, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/genome+sequence+wgs+data+sets/data+genome+sequencing+whole/pmc12977546-91-15-25
    Average 86 stars, based on 1 article reviews
    genome sequence wgs data sets - by Bioz Stars, 2026-10
    86/100 stars
    		  Buy from Supplier

    Image Search Results


    Clustering of the A. paragallinarum samples based on cgMLST. ( A ) Minimum spanning tree based on the allelic profiles of 1,170 core gene targets from 57 whole-genome samples using the SeqSphere+ software. ( B ) cgMLST dendrogram displaying 57 whole genome-sequenced A. paragallinarum samples. The distance matrix was built from all pairwise allelic profile comparisons of 1,170 cgMLST targets using the missing values as an own category option in SeqSphere+ software . Samples are color-coded by geographic origin, and dendrograms are rooted by the AP08_SA.

    Journal: Journal of Clinical Microbiology

    Article Title: A standardized, genome-guided MLST scheme for Avibacterium paragallinarum : enhanced epidemiological typing and validation against existing methods

    doi: 10.1128/jcm.01267-25

    Figure Lengend Snippet: Clustering of the A. paragallinarum samples based on cgMLST. ( A ) Minimum spanning tree based on the allelic profiles of 1,170 core gene targets from 57 whole-genome samples using the SeqSphere+ software. ( B ) cgMLST dendrogram displaying 57 whole genome-sequenced A. paragallinarum samples. The distance matrix was built from all pairwise allelic profile comparisons of 1,170 cgMLST targets using the missing values as an own category option in SeqSphere+ software . Samples are color-coded by geographic origin, and dendrograms are rooted by the AP08_SA.

    Article Snippet: A total of 75 A. paragallinarum samples were used in the study, consisting of 45 whole-genome sequence (WGS) data sets from the National Center for Biotechnology Information (NCBI) database in March 2023 and 30 additional samples, including 25 clinical samples (frozen isolates in glycerol, active culture plates, or PCR-positive samples in BHI broth) and five WGS data sets obtained from state diagnostic laboratories, including Salisbury Animal Health Laboratory (SAHL; Salisbury, Maryland); Iowa State Diagnostic Laboratory (Ames, Iowa), Lasher Laboratory (Georgetown, Delaware), Ohio Animal Diseases Diagnostic Laboratory (ADDL; Reynoldsburg, Ohio), and CEVA Animal Health (Lenexa, Kansas).

    Techniques: Software

    Minimum spanning tree of whole genome-sequenced samples based on two MLST profiles color-coded based on their geographic origin. ( A ) Minimum spanning tree of the WGS samples created using the seven-locus MLST scheme described by Guo et al. . ( B ) Minimum spanning tree of the WGS samples created using the MLST scheme developed in this study.

    Journal: Journal of Clinical Microbiology

    Article Title: A standardized, genome-guided MLST scheme for Avibacterium paragallinarum : enhanced epidemiological typing and validation against existing methods

    doi: 10.1128/jcm.01267-25

    Figure Lengend Snippet: Minimum spanning tree of whole genome-sequenced samples based on two MLST profiles color-coded based on their geographic origin. ( A ) Minimum spanning tree of the WGS samples created using the seven-locus MLST scheme described by Guo et al. . ( B ) Minimum spanning tree of the WGS samples created using the MLST scheme developed in this study.

    Article Snippet: A total of 75 A. paragallinarum samples were used in the study, consisting of 45 whole-genome sequence (WGS) data sets from the National Center for Biotechnology Information (NCBI) database in March 2023 and 30 additional samples, including 25 clinical samples (frozen isolates in glycerol, active culture plates, or PCR-positive samples in BHI broth) and five WGS data sets obtained from state diagnostic laboratories, including Salisbury Animal Health Laboratory (SAHL; Salisbury, Maryland); Iowa State Diagnostic Laboratory (Ames, Iowa), Lasher Laboratory (Georgetown, Delaware), Ohio Animal Diseases Diagnostic Laboratory (ADDL; Reynoldsburg, Ohio), and CEVA Animal Health (Lenexa, Kansas).

    Techniques: